ÌìÃÀ´«Ã½

Image Analysis Software and Computers

General Information

•   by James Jonkman, Claire M. Brown, Graham D. Wright, Kurt I. Anderson and Alison J. North. Nature Protocols 2020
•  by Jen-Yi Leea, and Maiko Kitaokab. Mol Biol Cell.  Jul 1;29(13):1519-1525 2018
•  by Douglas W Cromey. Sci Eng Ethics  2010

Analysis PC's

• Analysis Computers - There are two analysis workstations available to book, one for each campus, for demanding image processing and analysis (free to use for registered FILM users).

Open Source Software

• Software - FIJI (FIJI is just ImageJ)  - general image handling - a maintained version of ImageJ (Windows , Linux  and , MacOS). 
• Software - ICY for general image handling,  good for cell segmentation and tracking (Windows, Linux, MacOS) - Pasteur Institute.
•   - Fluorescent lifetime analysis software (Windows and MacOS) - developed at ÌìÃÀ´«Ã½.
•   - general image handling and analysis  - (Windows, Linux and MacOS) - NIH -  see FIJI 
•  - software for quantitative analysis of biological images (Windows and MacOS) - Broad Institute Inc.
•  - the interactive learning and segmentation toolkit (Windows , Linux  and , MacOS). 
•  is a powerful, flexible, extensible software platform for whole slide image analysis.

Commercial Software 

• Software - Huygens  - Deconvolution software, 3D rendering and analysis  (Licenced Server).
• Software - Imaris  - 3D visualisation/rendering and analysis (Windows - Licenced Server).